PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484880
Common NameARALYDRAFT_484880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 247aa    MW: 26650.6 Da    PI: 4.9151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484880genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024222244223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
              +C+ C+k+F++   L+ H +  H
   484880 222 SCGSCKKTFNSGNALEAHNKAkH 244
              6*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.4E-63169No hitNo description
PROSITE profilePS501579.972221247IPR007087Zinc finger, C2H2
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFWGIEVKP GKPVTVTPKE GTLIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST  60
ENIPQLFCDL VFEKEFELSH TWGKGSVYFV GYKTPNIKYP LNSEEEEEEV EEVPAGNAAK  120
AVAKPKAKPA EVKPVADAEE DDSDSDEMDE DDSDGDDDSE EEEETPTPKK PASNKKRANE  180
TAPKTPVSSK KAKVAVTPQK TGKDINTPKP ATQSPKSASQ VSCGSCKKTF NSGNALEAHN  240
KAKHSAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1955450.0AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds.
GenBankAY0653960.0AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
GenBankAY0967290.0AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875683.11e-179hypothetical protein ARALYDRAFT_484880, partial
SwissprotQ9FVE61e-113HDT1_ARATH; Histone deacetylase HDT1
TrEMBLD7LNF71e-179D7LNF7_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.5__872__AT3G44750.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-66histone deacetylase 3